Detailed information of SNP:
|
SNP ID:
sf0721637297(Gbrowse)
Chromosome: chr07 Position: 21637297 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 68.16% | 31.84% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 464 | 19.61% | 80.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 319 | 26.65% | 73.35% |
| Tropical Japonica | 82 | 1.22% | 98.78% |
| Japonica Intermediate | 63 | 7.94% | 92.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721637297 | A->C | INTERGENIC | None |