Detailed information of SNP:
|
SNP ID:
sf0721642949(Gbrowse)
Chromosome: chr07 Position: 21642949 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 798 | 17.92% | 82.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 210 | 21.90% | 78.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721642949 | C->A | INTERGENIC | None |