Detailed information of SNP:
|
SNP ID:
sf0721649268(Gbrowse)
Chromosome: chr07 Position: 21649268 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721649268 | G->A | INTERGENIC | None |