Detailed information of SNP:
|
SNP ID:
sf0721708584(Gbrowse)
Chromosome: chr07 Position: 21708584 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.99% | 5.01% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721708584 | T->A | LOC_Os07g36300(LOC_Os07g36300.1) | INTRON |