Detailed information of SNP:
|
SNP ID:
sf0721759145(Gbrowse)
Chromosome: chr07 Position: 21759145 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 59.05% | 40.95% |
| All Indica | 789 | 90.75% | 9.25% |
| All Japonica | 455 | 1.32% | 98.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 207 | 86.96% | 13.04% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 293 | 1.71% | 98.29% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721759145 | C->T | INTERGENIC | None |