Detailed information of SNP:
|
SNP ID:
sf0721867545(Gbrowse)
Chromosome: chr07 Position: 21867545 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.48% | 10.52% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721867545 | A->T | INTERGENIC | None |