Detailed information of SNP:
|
SNP ID:
sf0721886760(Gbrowse)
Chromosome: chr07 Position: 21886760 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 97.08% | 2.92% |
| All Indica | 784 | 95.15% | 4.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 206 | 90.78% | 9.22% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721886760 | T->C | INTERGENIC | None |