Detailed information of SNP:
|
SNP ID:
sf0721911861(Gbrowse)
Chromosome: chr07 Position: 21911861 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 66.53% | 33.47% |
| All Indica | 799 | 48.81% | 51.19% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 14.67% | 85.33% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721911861 | C->T | LOC_Os07g36630(LOC_Os07g36630.1) | Synonymous |