Detailed information of SNP:
|
SNP ID:
sf0721963059(Gbrowse)
Chromosome: chr07 Position: 21963059 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721963059 | A->G | INTERGENIC | None |