Detailed information of SNP:
|
SNP ID:
sf0721978357(Gbrowse)
Chromosome: chr07 Position: 21978357 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1351 | 97.85% | 2.15% |
| All Indica | 741 | 96.49% | 3.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 95.00% | 5.00% |
| Indica I | 350 | 96.29% | 3.71% |
| Indica II | 200 | 98.00% | 2.00% |
| Indica Intermediate | 191 | 95.29% | 4.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0721978357 | T->C | INTERGENIC | None |