Detailed information of SNP:
|
SNP ID:
sf0722001337(Gbrowse)
Chromosome: chr07 Position: 22001337 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.08% | 25.92% |
| All Indica | 798 | 69.30% | 30.70% |
| All Japonica | 495 | 87.47% | 12.53% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722001337 | G->A | INTERGENIC | None |