Detailed information of SNP:
|
SNP ID:
sf0722025358(Gbrowse)
Chromosome: chr07 Position: 22025358 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 61.46% | 38.54% |
| All Indica | 795 | 90.69% | 9.31% |
| All Japonica | 436 | 4.13% | 95.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 327 | 0.00% | 100.00% |
| Tropical Japonica | 61 | 24.59% | 75.41% |
| Japonica Intermediate | 48 | 6.25% | 93.75% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722025358 | A->G | LOC_Os07g36760(LOC_Os07g36760.1) | Synonymous |