Detailed information of SNP:
|
SNP ID:
sf0722032006(Gbrowse)
Chromosome: chr07 Position: 22032006 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 61.20% | 38.80% |
| All Indica | 796 | 90.33% | 9.67% |
| All Japonica | 435 | 3.91% | 96.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 82.94% | 17.06% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 326 | 0.00% | 100.00% |
| Tropical Japonica | 62 | 24.19% | 75.81% |
| Japonica Intermediate | 47 | 4.26% | 95.74% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722032006 | T->C | LOC_Os07g36770(LOC_Os07g36770.1) | INTRON |