Detailed information of SNP:
|
SNP ID:
sf0722043014(Gbrowse)
Chromosome: chr07 Position: 22043014 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722043014 | T->C | INTERGENIC | None |