Detailed information of SNP:
|
SNP ID:
sf0722085790(Gbrowse)
Chromosome: chr07 Position: 22085790 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.97% | 35.03% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 495 | 17.58% | 82.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722085790 | T->C | INTERGENIC | None |