Detailed information of SNP:
SNP ID:
sf0722094889(Gbrowse)
Chromosome: chr07 Position: 22094889 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 94.78% | 5.22% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 496 | 85.48% | 14.52% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 334 | 97.31% | 2.69% |
Tropical Japonica | 94 | 55.32% | 44.68% |
Japonica Intermediate | 68 | 69.12% | 30.88% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0722094889 | G->A | LOC_Os07g36900(LOC_Os07g36900.1) | INTRON |