Detailed information of SNP:



SNP ID: sf0722109538(Gbrowse)

Chromosome: chr07

Position: 22109538
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 65.40% 34.60%
All Indica798 92.98% 7.02%
All Japonica495 17.98% 82.02%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 90.61% 9.39%
Indica Intermediate210 83.81% 16.19%
Temperate Japonica334 2.69% 97.31%
Tropical Japonica94 60.64% 39.36%
Japonica Intermediate67 34.33% 65.67%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0722109538 T->C INTERGENIC None