Detailed information of SNP:
|
SNP ID:
sf0722130052(Gbrowse)
Chromosome: chr07 Position: 22130052 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 98.85% | 1.15% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 475 | 96.63% | 3.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 97.20% | 2.80% |
| Tropical Japonica | 86 | 94.19% | 5.81% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722130052 | C->A | INTERGENIC | None |