Detailed information of SNP:
|
SNP ID:
sf0722172636(Gbrowse)
Chromosome: chr07 Position: 22172636 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.28% | 5.72% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 84.38% | 15.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 89.19% | 10.81% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722172636 | T->C | INTERGENIC | None |