Detailed information of SNP:
|
SNP ID:
sf0722225613(Gbrowse)
Chromosome: chr07 Position: 22225613 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 87.64% | 12.36% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 65.99% | 34.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 80.24% | 19.76% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722225613 | C->T | INTERGENIC | None |