Detailed information of SNP:
|
SNP ID:
sf0722234885(Gbrowse)
Chromosome: chr07 Position: 22234885 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 77.52% | 22.48% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 41.65% | 58.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722234885 | C->T | INTERGENIC | None |