Detailed information of SNP:
|
SNP ID:
sf0722235143(Gbrowse)
Chromosome: chr07 Position: 22235143 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 85.25% | 14.75% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 490 | 63.88% | 36.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 332 | 80.12% | 19.88% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722235143 | G->A | INTERGENIC | None |