Detailed information of SNP:
|
SNP ID:
sf0722240555(Gbrowse)
Chromosome: chr07 Position: 22240555 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 76.98% | 23.02% |
| All Indica | 795 | 96.10% | 3.90% |
| All Japonica | 495 | 41.82% | 58.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 22.16% | 77.84% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722240555 | G->A | INTERGENIC | None |