Detailed information of SNP:
|
SNP ID:
sf0722261104(Gbrowse)
Chromosome: chr07 Position: 22261104 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 61.00% | 39.00% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 493 | 3.85% | 96.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 331 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722261104 | G->T | INTERGENIC | None |