Detailed information of SNP:
|
SNP ID:
sf0722263984(Gbrowse)
Chromosome: chr07 Position: 22263984 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 80.87% | 19.13% |
| All Indica | 788 | 84.01% | 15.99% |
| All Japonica | 434 | 87.79% | 12.21% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 209 | 81.34% | 18.66% |
| Indica Intermediate | 204 | 71.57% | 28.43% |
| Temperate Japonica | 313 | 97.44% | 2.56% |
| Tropical Japonica | 72 | 58.33% | 41.67% |
| Japonica Intermediate | 49 | 69.39% | 30.61% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722263984 | A->T | LOC_Os07g37164(LOC_Os07g37164.1) | INTRON |