Detailed information of SNP:
|
SNP ID:
sf0722269563(Gbrowse)
Chromosome: chr07 Position: 22269563 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.92% | 36.08% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722269563 | G->A | LOC_Os07g37180(LOC_Os07g37180.2) | INTRON |
| sf0722269563 | G->A | LOC_Os07g37180(LOC_Os07g37180.1) | INTRON |