Detailed information of SNP:
|
SNP ID:
sf0722276887(Gbrowse)
Chromosome: chr07 Position: 22276887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.43% | 15.57% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722276887 | C->T | INTERGENIC | None |