Detailed information of SNP:
|
SNP ID:
sf0722382207(Gbrowse)
Chromosome: chr07 Position: 22382207 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 63.70% | 36.30% |
| All Indica | 791 | 90.64% | 9.36% |
| All Japonica | 493 | 18.26% | 81.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 333 | 7.21% | 92.79% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722382207 | G->A | INTERGENIC | None |