Detailed information of SNP:
|
SNP ID:
sf0722449848(Gbrowse)
Chromosome: chr07 Position: 22449848 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 79.69% | 20.31% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 491 | 43.58% | 56.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 331 | 47.73% | 52.27% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 66 | 30.30% | 69.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722449848 | C->T | INTERGENIC | None |