Detailed information of SNP:
|
SNP ID:
sf0722487408(Gbrowse)
Chromosome: chr07 Position: 22487408 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 98.35% | 1.65% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 469 | 95.31% | 4.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 316 | 93.04% | 6.96% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722487408 | G->A | LOC_Os07g37550(LOC_Os07g37550.1) | Non-Synonymous SNP |