Detailed information of SNP:
|
SNP ID:
sf0722492517(Gbrowse)
Chromosome: chr07 Position: 22492517 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.31% | 29.69% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 496 | 31.65% | 68.35% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 37.43% | 62.57% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722492517 | C->A | LOC_Os07g37560(LOC_Os07g37560.1) | INTRON |
| sf0722492517 | C->A | LOC_Os07g37560(LOC_Os07g37560.3) | INTRON |
| sf0722492517 | C->A | LOC_Os07g37560(LOC_Os07g37560.2) | INTRON |