Detailed information of SNP:
|
SNP ID:
sf0722504000(Gbrowse)
Chromosome: chr07 Position: 22504000 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 93.97% | 6.03% |
| All Indica | 778 | 93.96% | 6.04% |
| All Japonica | 477 | 96.23% | 3.77% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 195 | 93.85% | 6.15% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 80 | 82.50% | 17.50% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722504000 | C->T | INTERGENIC | None |