Detailed information of SNP:
|
SNP ID:
sf0722545550(Gbrowse)
Chromosome: chr07 Position: 22545550 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.33% | 32.67% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 495 | 17.58% | 82.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 333 | 19.52% | 80.48% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722545550 | G->A | INTERGENIC | None |