Detailed information of SNP:
|
SNP ID:
sf0722553923(Gbrowse)
Chromosome: chr07 Position: 22553923 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 97.86% | 2.14% |
| All Indica | 747 | 96.39% | 3.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 54 | 96.30% | 3.70% |
| Indica I | 352 | 95.74% | 4.26% |
| Indica II | 201 | 97.01% | 2.99% |
| Indica Intermediate | 194 | 96.91% | 3.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722553923 | C->T | INTERGENIC | None |