Detailed information of SNP:
|
SNP ID:
sf0722578987(Gbrowse)
Chromosome: chr07 Position: 22578987 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.68% | 38.32% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 22.09% | 77.91% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722578987 | C->G | INTERGENIC | None |