Detailed information of SNP:
|
SNP ID:
sf0722612865(Gbrowse)
Chromosome: chr07 Position: 22612865 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1298 | 57.40% | 42.60% |
| All Indica | 765 | 91.63% | 8.37% |
| All Japonica | 474 | 3.80% | 96.20% |
| Aus | 10 | 80.00% | 20.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 207 | 77.29% | 22.71% |
| Indica Intermediate | 185 | 91.89% | 8.11% |
| Temperate Japonica | 331 | 0.30% | 99.70% |
| Tropical Japonica | 77 | 18.18% | 81.82% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722612865 | A->C | LOC_Os07g37720(LOC_Os07g37720.1) | INTRON |