Detailed information of SNP:
|
SNP ID:
sf0722664350(Gbrowse)
Chromosome: chr07 Position: 22664350 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 73.86% | 26.14% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 460 | 23.70% | 76.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 21.86% | 78.14% |
| Tropical Japonica | 87 | 36.78% | 63.22% |
| Japonica Intermediate | 62 | 14.52% | 85.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722664350 | C->A | INTERGENIC | None |