Detailed information of SNP:
|
SNP ID:
sf0722667238(Gbrowse)
Chromosome: chr07 Position: 22667238 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 58.77% | 41.23% |
| All Indica | 792 | 28.91% | 71.09% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 4.55% | 95.45% |
| Indica II | 208 | 71.15% | 28.85% |
| Indica Intermediate | 210 | 30.48% | 69.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722667238 | G->T | LOC_Os07g37800(LOC_Os07g37800.2) | INTRON |
| sf0722667238 | G->T | LOC_Os07g37800(LOC_Os07g37800.1) | INTRON |
| sf0722667238 | G->T | LOC_Os07g37800(LOC_Os07g37800.3) | INTRON |