Detailed information of SNP:
|
SNP ID:
sf0722678464(Gbrowse)
Chromosome: chr07 Position: 22678464 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.44% | 47.56% |
| All Indica | 796 | 82.04% | 17.96% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722678464 | G->A | INTERGENIC | None |