Detailed information of SNP:
|
SNP ID:
sf0722678496(Gbrowse)
Chromosome: chr07 Position: 22678496 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 51.25% | 48.75% |
| All Indica | 782 | 80.95% | 19.05% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 364 | 92.03% | 7.97% |
| Indica II | 210 | 58.10% | 41.90% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722678496 | C->T | INTERGENIC | None |