Detailed information of SNP:
|
SNP ID:
sf0722686154(Gbrowse)
Chromosome: chr07 Position: 22686154 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 61.79% | 38.21% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 496 | 12.70% | 87.30% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 18.21% | 81.79% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722686154 | C->T | INTERGENIC | None |