Detailed information of SNP:
|
SNP ID:
sf0722740448(Gbrowse)
Chromosome: chr07 Position: 22740448 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 94.88% | 5.12% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 492 | 90.24% | 9.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 86.10% | 13.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722740448 | C->T | LOC_Os07g37900(LOC_Os07g37900.1) | Non-Synonymous SNP |