Detailed information of SNP:
|
SNP ID:
sf0722741989(Gbrowse)
Chromosome: chr07 Position: 22741989 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 94.30% | 5.70% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 484 | 90.50% | 9.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 324 | 86.73% | 13.27% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722741989 | C->T | LOC_Os07g37900(LOC_Os07g37900.1) | Synonymous |