Detailed information of SNP:
|
SNP ID:
sf0722754503(Gbrowse)
Chromosome: chr07 Position: 22754503 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 84.92% | 15.08% |
| All Indica | 794 | 96.35% | 3.65% |
| All Japonica | 417 | 59.71% | 40.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 271 | 79.70% | 20.30% |
| Tropical Japonica | 85 | 21.18% | 78.82% |
| Japonica Intermediate | 61 | 24.59% | 75.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722754503 | G->A | LOC_Os07g37920(LOC_Os07g37920.1) | UTR_3_PRIME |