Detailed information of SNP:
|
SNP ID:
sf0722835941(Gbrowse)
Chromosome: chr07 Position: 22835941 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.73% | 17.27% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 72.43% | 27.57% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 62.69% | 37.31% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722835941 | C->A | LOC_Os07g38080(LOC_Os07g38080.1) | UTR_5_PRIME |
| sf0722835941 | C->A | LOC_Os07g38080(LOC_Os07g38080.2) | INTRON |