Detailed information of SNP:
|
SNP ID:
sf0722853363(Gbrowse)
Chromosome: chr07 Position: 22853363 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1214 | 86.33% | 13.67% |
| All Indica | 784 | 97.07% | 2.93% |
| All Japonica | 309 | 55.66% | 44.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 198 | 93.94% | 6.06% |
| Temperate Japonica | 208 | 67.31% | 32.69% |
| Tropical Japonica | 55 | 32.73% | 67.27% |
| Japonica Intermediate | 46 | 30.43% | 69.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722853363 | C->T | INTERGENIC | None |