Detailed information of SNP:
|
SNP ID:
sf0722871429(Gbrowse)
Chromosome: chr07 Position: 22871429 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1332 | 83.33% | 16.67% |
| All Indica | 718 | 92.90% | 7.10% |
| All Japonica | 496 | 83.06% | 16.94% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 369 | 97.83% | 2.17% |
| Indica II | 154 | 81.17% | 18.83% |
| Indica Intermediate | 195 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722871429 | T->C | INTERGENIC | None |