Detailed information of SNP:
|
SNP ID:
sf0722911073(Gbrowse)
Chromosome: chr07 Position: 22911073 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 73.45% | 26.55% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 494 | 35.83% | 64.17% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 333 | 41.44% | 58.56% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722911073 | A->T | INTERGENIC | None |