Detailed information of SNP:
|
SNP ID:
sf0722936828(Gbrowse)
Chromosome: chr07 Position: 22936828 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 75.16% | 24.84% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 66.00% | 34.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722936828 | A->G | INTERGENIC | None |