Detailed information of SNP:
|
SNP ID:
sf0722938071(Gbrowse)
Chromosome: chr07 Position: 22938071 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 96.35% | 3.65% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 474 | 89.87% | 10.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 322 | 86.65% | 13.35% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0722938071 | C->T | INTERGENIC | None |